Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0769733.2b.2b with 11 members (Guanylate cyclase domain-containing protein)

Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii /

... /

Tetrapoda / Amniota /

Sauria /

Completeness score: 0.28

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This HOG has 31 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0769733.2b.3b.2a	38	4	Guanylate cyclase domain-containing protein
2	HOG:E0769733.2b.3a	29	3	Guanylate cyclase domain-containing protein
3	HOG:E0769733.1b	26	4	Guanylate cyclase domain-containing protein
4	HOG:E0565214	20	4	guanylate cyclase
5	HOG:E0769733.2b.3b	18	12	Guanylate cyclase domain-containing protein
6	HOG:E0769733.2b.3b.2b	16	5	Guanylate cyclase domain-containing protein
7	HOG:E0769733.2b.2a	16	5	Guanylate cyclase domain-containing protein
8	HOG:E0769733.2c.4a	11	1	Guanylate cyclase domain-containing protein
9	HOG:E0769733.2c	10	4	Guanylate cyclase domain-containing protein
10	HOG:E0769733.1a	9	1	Guanylate cyclase domain-containing protein
11	HOG:E0678306	9	2	Guanylate cyclase domain-containing protein
12	HOG:E0648731.1a	9	4	Guanylate cyclase domain-containing protein
13	HOG:E0787120.1b	8	1	guanylate cyclase
14	HOG:E0785512.1a.1b	8	2	guanylate cyclase
15	HOG:E0769733.1c.1a	8	1	Guanylate cyclase domain-containing protein
16	HOG:E0648731.2b	8	2	Guanylate cyclase domain-containing protein
17	HOG:E0769733.1c	7	3	Guanylate cyclase domain-containing protein
18	HOG:E0787120	6	8	guanylate cyclase
19	HOG:E0769733.1c.1b	6	1	Guanylate cyclase domain-containing protein
20	HOG:E0549721	6	2	Guanylate cyclase
21	HOG:E0787120.2b	5	1	guanylate cyclase
22	HOG:E0787120.2a	5	1	guanylate cyclase
23	HOG:E0777851.2g	4	8	Guanylate cyclase domain-containing protein
24	HOG:E0769733.2d	4	1	Guanylate cyclase domain-containing protein
25	HOG:E0769733.2c.4b	4	1	Guanylate cyclase domain-containing protein

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